STRINGSTRING
AAO58138.1 AAO58138.1 AAO58139.1 AAO58139.1 AAO56533.1 AAO56533.1 AAO55743.1 AAO55743.1 AAO58137.1 AAO58137.1 fimA fimA AAO56437.1 AAO56437.1 AAO58136.1 AAO58136.1 AAO56317.1 AAO56317.1 AAO53917.1 AAO53917.1 AAO54720.1 AAO54720.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO58138.1ISPsy13, transposase OrfA. (83 aa)    
Predicted Functional Partners:
AAO58139.1
ISPsy13, transposase OrfB.
 
  
 0.904
AAO56533.1
ISPsy12, transposase OrfB; Similar to GP:9946886, and GP:9946886; identified by sequence similarity; putative.
  
  
 0.749
AAO55743.1
Fimbrial protein, putative.
  
     0.485
AAO58137.1
ISPsy5, Orf1; The gene assignment is based on its position in a multicopy insertion sequence, directly adjacent to an ORF matching an HMM for the IS66 family.
       0.485
fimA
Type I pilus biogensis protein FimA.
  
     0.476
AAO56437.1
P-hydroxycinnamoyl CoA hydratase/lyase; See PMID:20190049 for expression data; Belongs to the enoyl-CoA hydratase/isomerase family.
  
     0.467
AAO58136.1
ISPsy5, transposase; Similar to GP:8037785; identified by sequence similarity; putative.
       0.463
AAO56317.1
Fatty acid desaturase; Identified by match to PFAM protein family HMM PF01569.
  
     0.456
AAO53917.1
Rhs family protein; Similar to GP:15130940, and SP:P16919; identified by sequence similarity; putative.
  
     0.422
AAO54720.1
Conserved hypothetical protein; Similar to GP:17430979; identified by sequence similarity; putative.
  
     0.409
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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